I am interested in structural biology and biochemistry for both structure-based drug discovery and basic science applications. I obtained my PhD in Poland and have worked in Germany as a postdoctoral researcher. Now I am working on molecular basis of hypusination.
Scientific Awards and Fellowships
m4award 2019 supported by the Bavarian State Ministry of Economic Affairs, State Development and Energy for the project “Development of novel antibiotics for the treatment of infections with multi-resistant Gram-negative bacteria (FRAgment based antiBIOTICS – FRABIOTICS).“ (2019)
Principal Investigator of ETIUDA grant funded by National Science Center of Poland, title: “Structural studies on the interaction of the human PD-1/PD-L1 immune receptor complex and its inhibitors”. (2016)
Publications
Structure and molecular recognition mechanism of IMP-13 beta-lactamase. Softley C*, Zak KM*, Bostock MJ*, Fino R, Zhou RX, Kolonko M, Mejdi-Nitiu R, Meyer H, Sattler M, Popowicz G. Antimicrob Agents Chemother. 2020 May 21;64(6):e00123-20. *equal author contribution
Crystal Structure of Kluyveromyces lactis Glucokinase (KlGlk1). Zak KM, Kalińska M, Wątor E, Kuśka K, Krutyhołowa R, Dubin G, Popowicz GM, Grudnik P. Int J Mol Sci. 2019 Sep 28;20(19). pii: E4821.
Structure and characterization of Aspergillus fumigatus lipase B with a unique, oversized regulatory subdomain. Huang W, Lan D, Popowicz GM, Zak KM, Zhao Z, Yuan H, Yang B, Wang Y. FEBS J. 2019 Jun;286(12):2366-2380.
Small-molecule inhibitors of PD-1/PD-L1 immune checkpoint alleviate the PD-L1-induced exhaustion of T-cells. Skalniak L*, Zak KM*, Guzik K, Magiera K, Musielak B, Pachota M, Szelazek B, Kocik J, Grudnik P, Tomala M, Krzanik S, Pyrc K, Dömling A, Dubin G, Holak TA. Oncotarget. 2017 Aug 7;8(42):72167-72181. *equal author contribution
Bioactive Macrocyclic Inhibitors of the PD-1/PD-L1 Immune Checkpoint. Magiera-Mularz K, Skalniak L, Zak KM, Musielak B, Rudzinska-Szostak E, Berlicki Ł, Kocik J, Grudnik P, Sala D, Zarganes-Tzitzikas T, Shaabani S, Dömling A, Dubin G, Holak TA. Angew Chem Int Ed Engl. 2017 Oct 23;56(44):13732-13735.
Structural Biology of the Immune Checkpoint Receptor PD-1 and Its Ligands PD-L1/PD-L2. Zak KM, Grudnik P, Magiera K, Dömling A, Dubin G, Holak TA. Structure. 2017 Aug 1;25(8):1163-1174.
Small-Molecule Inhibitors of the Programmed Cell Death-1/Programmed Death-Ligand 1 (PD-1/PD-L1) Interaction via Transiently Induced Protein States and Dimerization of PD-L1. Guzik K, Zak KM, Grudnik P, Magiera K, Musielak B, Törner R, Skalniak L, Dömling A, Dubin G, Holak TA. J Med Chem. 2017 Jul 13;60(13): 5857-5867.
A Unique Mdm2-Binding Mode of the 3-Pyrrolin-2-one- and 2-Furanone-Based Antagonists of the p53-Mdm2 Interaction. Surmiak E, Twarda-Clapa A, Zak KM, Musielak B, Tomala MD, Kubica K, Grudnik P, Madej M, Jablonski M, Potempa J, Kalinowska-Tluscik J, Dömling A, Dubin G, Holak TA. ACS Chem Biol. 2016 Dec 16;11(12):3310-3318.
Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Zak KM, Grudnik P, Guzik K, Zieba BJ, Musielak B, Dömling A, Dubin G, Holak TA. Oncotarget. 2016 May 24;7(21):30323-35.
Structure of the Complex of Human Programmed Death 1, PD-1, and Its Ligand PD-L1. Zak KM, Kitel R, Przetocka S, Golik P, Guzik K, Musielak B, Dömling A, Dubin G, Holak TA. Structure. 2015 Dec 1;23(12):2341-2348.
Mdm2 and MdmX inhibitors for the treatment of cancer: a patent review (2011-present). Zak K, Pecak A, Rys B, Wladyka B, Dömling A, Weber L, Holak TA, Dubin G. Expert Opin Ther Pat. 2013 Apr;23(4):425-48.
Contact
Address: Malopolska Centre of Biotechnology, Gronostajowa st. 7a, 30-387 Krakow, Poland